# Generated by roxygen2: do not edit by hand

export(ascat.GCcorrect)
export(ascat.asmultipcf)
export(ascat.aspcf)
export(ascat.correctLogR)
export(ascat.getAlleleCounts)
export(ascat.getBAFsAndLogRs)
export(ascat.loadData)
export(ascat.metrics)
export(ascat.plotAdjustedAscatProfile)
export(ascat.plotAscatProfile)
export(ascat.plotGenotypes)
export(ascat.plotNonRounded)
export(ascat.plotRawData)
export(ascat.plotSegmentedData)
export(ascat.plotSunrise)
export(ascat.predictGermlineGenotypes)
export(ascat.prepareHTS)
export(ascat.prepareTargetedSeq)
export(ascat.runAscat)
export(ascat.synchroniseFiles)
export(base.gw.plot)
export(make_segments)
export(runASCAT)
import(RColorBrewer)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,pintersect)
importFrom(IRanges,IRanges)
importFrom(RColorBrewer,brewer.pal)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(S4Vectors,width)
importFrom(data.table,fread)
importFrom(doParallel,registerDoParallel)
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.new)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,image)
importFrom(graphics,par)
importFrom(graphics,points)
importFrom(graphics,rect)
importFrom(graphics,text)
importFrom(splines,ns)
importFrom(stats,binom.test)
importFrom(stats,cor)
importFrom(stats,lm)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,residuals)
importFrom(stats,runif)
importFrom(stats,runmed)
importFrom(stats,sd)
importFrom(utils,head)
importFrom(utils,read.table)
importFrom(utils,write.table)
